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Q-Line Direct RNA Sequencing Kit
Q-SQK-RNA004

A sequencing kit optimised for sequencing native RNA with improved output and accuracy.

  • Preparation time: ~140 minutes
  • Can be used with total RNA or an enriched sample (e.g. poly(A) tailed) as a starting input material
  • Does not require fragmentation

Product lead time: 1 week

3Released
  • Products from Oxford Nanopore Technologies that have completed their Early Access
  • Users can continue to provide feedback through feature request pinboard
  • Warranty periods extended to 1 – 3 months
  • Product continues to iterate with upgrade notifications of up to 3 months
  • Lead time visible in store
  • Product subject to availability

Information

This kit is highly recommended for users who:

  • Would like to remove PCR bias
  • Are exploring attributes of native RNA such as modified bases

Please note that to use this kit, you will need to purchase additional 3rd party reagents: see the "3rd party materials" tab for more detail.

The Q-Line Direct RNA Sequencing Kit features:

FeatureProperty
Preparation time~140 minutes
Input requirement300 ng poly(A) tailed RNA or 1 μg total RNA
PCR requiredNo
FragmentationNo
Read lengthRNA length
Pack size6 reactions
Storage−30°C to −20°C
StabilityStore at –30°C to –20°C until the labelled expiration date.
Q reagents are supplied with a minimum of 3 months shelf life remaining at the time of delivery.
Expiration dates are displayed in DD-MMM-YYYY format.

Shipping and logistics:

Bulk order options are available. All orders can be split for delivery to best suit your needs.

Sequencing kits are sensitive to temperature. To maintain their temperature and ensure optimal results during use, consumables are shipped with cool packs. It is not unusual for the cool packs to be warm when you receive them. For optimal results, you should immediately store your new kits at their correct temperatures.

We recommend that sequencing kits should be stored between −30°C and −20°C until you are ready to use them.

Workflow

The Q-Line Direct RNA Sequencing Kit (Q-SQK-RNA004) is used to prepare either poly(A)-tailed RNA or total RNA for sequencing by performing reverse transcription to synthesise a secondary complementary cDNA strand for stability to improve sequencing output. Sequencing adapters are then attached to the RNA-cDNA hybrid for sequencing.

Direct RNA workflow

What's in the box

The Q-Line Direct RNA Sequencing Kit contains enough reagents for six reactions.

Q_SQK_RNA004

NameAbbreviationCap colourQuantityMinimum fill volume per container (μl)
RT AdapterRTABlue16
RNA Ligation AdapterRLAGreen136
Wash BufferWSBOrange2900
RNA Elution BufferREBAmber178
Library SolutionLISWhite cap, pink label1153
Sequencing BufferSBRed1225
RNA Flush TetherRFTViolet1180
Flow Cell FlushFCFN/A17,020

3rd party materials

  • 1.5 ml Eppendorf DNA LoBind tubes
  • 0.2 ml thin-walled PCR tubes
  • Freshly prepared 70% ethanol in nuclease-free water
  • NEBNext® Companion Module for Oxford Nanopore Technologies® Direct RNA Sequencing (E3440S)
  • Agencourt RNAClean XP beads (Beckman Coulter™, A63987)
  • Qubit™ RNA HS Assay Kit (ThermoFisher Q32852)
  • Qubit™ dsDNA HS Assay Kit (ThermoFisher, Q32851)
  • Qubit™ Assay Tubes (Invitrogen, Q32856)

Equipment:

  • Hula mixer (gentle rotator mixer)
  • Magnetic separation rack, suitable for 1.5 ml Eppendorf tubes
  • Microfuge
  • Vortex mixer
  • Ice bucket with ice
  • Timer
  • Thermal cycler
  • Qubit™ fluorometer (or equivalent for QC check)
  • P1000 pipette and tips
  • P200 pipette and tips
  • P100 pipette and tips
  • P20 pipette and tips
  • P10 pipette and tips
  • P2 pipette and tips
  • Eppendorf 5424 centrifuge (or equivalent)

Compatibility

The Q-Line Direct RNA Sequencing Kit can be used together with:

Flow cells

  • Q-Line MinION Flow Cell RNA (Q-FLO-MIN004R)

Devices

  • GridION Q sequencing device (Q-GRD-MK1)

Getting started

Buy a MinION starter packNanopore storeSequencing service providersChannel PartnersChange store (UK)

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